Package: cancerGI
Type: Package
Title: Analyses of Cancer Gene Interaction
Version: 1.0.1
Date: 2023-08-30
Author: Audrey Qiuyan Fu and Xiaoyue Wang
Maintainer: Audrey Q. Fu <audreyqyfu@gmail.com>
Description: Functions to perform the following analyses: i) inferring
        epistasis from RNAi double knockdown data; ii) identifying gene
        pairs of multiple mutation patterns; iii) assessing association
        between gene pairs and survival; and iv) calculating the
        smallworldness of a graph (e.g., a gene interaction network).
        Data and analyses are described in Wang, X., Fu, A. Q.,
        McNerney, M. and White, K. P. (2014). Widespread genetic
        epistasis among breast cancer genes. Nature Communications. 5
        4828. <doi:10.1038/ncomms5828>.
Depends: R (>= 2.10)
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Imports: systemfit, qvalue, survival, reshape2, igraph
NeedsCompilation: no
Packaged: 2026-06-07 09:18:30 UTC; root
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libxml2-dev
Repository: https://audreyqyfu.r-universe.dev
Date/Publication: 2023-09-07 08:31:18 UTC
RemoteUrl: https://github.com/cran/cancerGI
RemoteRef: HEAD
RemoteSha: 6ec6ae0c5bffb1d9d1e5a319b9ad5c808b28324e